CSS5-IRD :  LARMANDE, Pierre / Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy

Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy
semantic web and ontologies, interoperability, FAIR data portal development

Competencies of  LARMANDE, Pierre , HDR scientist
UMR DIADE   plant DIversity Adaptation and DEvelopment

Agronomyartificial intelligenceartificial neural networkbig databiochemistrybioinformaticsdata (genetics)data (multisource)data analysisdata discoverydata disseminationdata heterogeneitydata integrationdata interoperabilitydata miningDATA SCIENCEdata sharingdata warehousedatabase engineeringdatabase management system (DBMS)entity linking (fr: annotation sémantique)FAIR (Find, Access, Interoperate, Reuse) data /  Genome-Wide Association Study (GWAS) /  genomicsgenomics (functional)information systeminteroperabilityknowledge discoveryknowledge representationmachine - deep learningmodelling (molecular)Molecular BiologyNGS (Next Generation Sequencing)ontologyphenotypericeSDG 02 (Sust. Devel. Goal - Alimentation)SDG 04 (Sust. Devel. Goal - Education)SDG 15 (Sust. Devel. Goal - Terrestrial ecosystems)semantic web /  tropical plant /  UMR Diade (plant DIversity Adapt. & DEv.)Vietnamweb of dataWeb portal devel. /

Competencies in black are unique of P. Larmande's profile in the current state of the database

•	D2KAB project: a framework to turn agronomy and biodiversity data into semantically described, interoperable, actionable, open knowledge
•	AgroLD (Agronomic Linked Data project): an RDF Knowledge-based Database for plant molecular networks
•	PyRice: a Python package  API developed to access numerous rice supported databases and produce consistent outputs. 
•	GIGWA (Genotype Investigator for Genome Wide Analyses): a web application to manage genomic and genotyping data from NGS analysis
•	OryzaGP (see GitHub repository) : A dataset for Named Entity Recognition for rice genes.
citations DBLP   citations Google scholar   citations IRD   citations ORCID   citations PubMed   citations ResearchGate   HDR report (fr)   linkedIn access   Personal home page   software GIGWA   software on GitHub   software PyRice   UMR DIADE   web-link AgroLD   web-link D2KAB   web-link ICT-Lab   _get in touch  



Last update : 2021-06-17

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