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Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy
semantic web and ontologies, interoperability, FAIR data portal development

Institut de Recherche pour le Développement

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CSS5-IRD :  LARMANDE, Pierre / Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy Competencies of  LARMANDE, Pierre , senior scientist
UMR DIADE   plant DIversity Adaptation and DEvelopment

citations DBLP   citations Google scholar   citations IRD   citations ORCID   citations PubMed   citations ResearchGate   HDR report (fr)   linkedIn access   Personal home page   software GIGWA   software on GitHub   software PyRice   UMR DIADE   web-link AgroLD   web-link D2KAB   web-link ICT-Lab   _get in touch  
•	D2KAB project: a framework to turn agronomy and biodiversity data into semantically described, interoperable, actionable, open knowledge
•	AgroLD (Agronomic Linked Data project): an RDF Knowledge-based Database for plant molecular networks
•	PyRice: a Python package  API developed to access numerous rice supported databases and produce consistent outputs. 
•	GIGWA (Genotype Investigator for Genome Wide Analyses): a web application to manage genomic and genotyping data from NGS analysis
•	OryzaGP (see GitHub repository) : A dataset for Named Entity Recognition for rice genes.
Below: competencies in black when any are unique to P. Larmande's profile in the current state of the database

Agronomyartificial intelligenceartificial neural networkbig databiochemistrybioinformaticsBiology (computational)Cameroondata (genetics)data (multisource)data analysisdata cleaningdata clusteringdata discoverydata disseminationdata driven approachdata heterogeneitydata infrastructuredata integrationdata interoperabilitydata miningdata preprocessingdata processingDATA SCIENCEdata sharingdata workflow developmentdatabase engineeringdatabase management system (DBMS)entity linking (fr: annotation sémantique)FAIR (Find, Access, Interoperate, Reuse) data /  Genome-Wide Association Study (GWAS) /  genomicsgenomics (functional)information systemintegrative approachinteroperabilityknowledge discoveryknowledge representationmachine - deep learningmodelling (molecular)Molecular Biologymulti-scale (functional)NGS (Next Generation Sequencing)ontologyopen dataopen sciencephenotypeplant biologyplant variety improvementriceSDG 02 (Sust. Devel. Goal - Alimentation)SDG 04 (Sust. Devel. Goal - Education)SDG 15 (Sust. Devel. Goal - Terrestrial ecosystems)semantic webSenegaltext miningtropical plantUMR Diade (plant DIversity Adapt. & DEv.)Vietnamweb of dataWeb portal development /


Last update : 2024-01-31  (id: 58 )

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