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Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy
semantic web and ontologies, interoperability, FAIR data portal development
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CSS5-IRD
:
LARMANDE, Pierre
/
Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy
Competencies of
LARMANDE, Pierre
,
senior scientist
UMR DIADE
plant DIversity Adaptation and DEvelopment
 citations DBLP
 citations Google scholar
 citations IRD
 citations ORCID
 citations PubMed
 citations ResearchGate
 HDR report (fr)
 linkedIn access
 Personal home page
 software GIGWA
 software on GitHub
 software PyRice
 UMR DIADE
 web-link AgroLD
 web-link D2KAB
 web-link ICT-Lab
 _get in touch
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• D2KAB project: a framework to turn agronomy and biodiversity data into semantically described, interoperable, actionable, open knowledge
• AgroLD (Agronomic Linked Data project): an RDF Knowledge-based Database for plant molecular networks
• PyRice: a Python package API developed to access numerous rice supported databases and produce consistent outputs.
• GIGWA (Genotype Investigator for Genome Wide Analyses): a web application to manage genomic and genotyping data from NGS analysis
• OryzaGP (see GitHub repository) : A dataset for Named Entity Recognition for rice genes.
Below: competencies in black when any are unique to
P. Larmande's profile in the current state of the database
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Agronomy
/
artificial intelligence
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artificial neural network
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big data
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biochemistry
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bioinformatics
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Biology (computational)
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Cameroon
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data (genetics)
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data (multisource)
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data analysis
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data cleaning
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data clustering
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data discovery
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data dissemination
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data driven approach
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data heterogeneity
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data infrastructure
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data integration
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data interoperability
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data mining
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data preprocessing
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data processing
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DATA SCIENCE
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data sharing
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data workflow development
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database engineering
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database management system (DBMS)
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entity linking (fr: annotation sémantique)
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FAIR (Find, Access, Interoperate, Reuse) data
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Genome-Wide Association Study (GWAS)
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genomics
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genomics (functional)
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information system
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integrative approach
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interoperability
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knowledge discovery
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knowledge representation
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machine - deep learning
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modelling (molecular)
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Molecular Biology
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multi-scale (functional)
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NGS (Next Generation Sequencing)
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ontology
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open data
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open science
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phenotype
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plant biology
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plant variety improvement
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rice
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SDG 02 (Sust. Devel. Goal - Alimentation)
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SDG 04 (Sust. Devel. Goal - Education)
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SDG 15 (Sust. Devel. Goal - Terrestrial ecosystems)
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semantic web
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Senegal
/
text mining
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tropical plant
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UMR Diade (plant DIversity Adapt. & DEv.)
/
Vietnam
/
web of data
/
Web portal development
/
____________________________________________________________________
Last update : 2024-01-31
(id:
58
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