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Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy
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/ Agronomy / artificial intelligence / artificial neural network / big data / biochemistry / bioinformatics / data (genetics) / data (multisource) / data analysis / data discovery / data dissemination / data heterogeneity / data integration / data interoperability / data mining / DATA SCIENCE / data sharing / data warehouse / database engineering / database management system (DBMS) / entity linking (fr: annotation sémantique) / FAIR (Find, Access, Interoperate, Reuse) data / Genome-Wide Association Study (GWAS) / genomics / genomics (functional) / information system / interoperability / knowledge discovery / knowledge representation / machine - deep learning / modelling (molecular) / Molecular Biology / NGS (Next Generation Sequencing) / ontology / phenotype / Python (programming language) / rice / SDG 02 (Sust. Devel. Goal - Alimentation) / SDG 04 (Sust. Devel. Goal - Education) / SDG 15 (Sust. Devel. Goal - Terrestrial ecosystems) / semantic web / tropical plant / UMR Diade (plant DIversity Adapt. & DEv.) / Vietnam / web of data / Web portal devel. /
Competencies in black are unique of P. Larmande 's profile in the current state of the database• D2KAB project: a framework to turn agronomy and biodiversity data into semantically described, interoperable, actionable, open knowledge • AgroLD (Agronomic Linked Data project): an RDF Knowledge-based Database for plant molecular networks • PyRice: a Python package API developed to access numerous rice supported databases and produce consistent outputs. • GIGWA (Genotype Investigator for Genome Wide Analyses): a web application to manage genomic and genotyping data from NGS analysis • OryzaGP (see GitHub repository) : A dataset for Named Entity Recognition for rice genes.
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web-link ICT-Lab
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web-link D2KAB
web-link AgroLD
software PyRice
software GIGWA
Last update : 2021-06-17
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