CSS5-IRD :  LARMANDE, Pierre / Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy

Knowledge Extraction and Diffusion of Genome-Phenome Relationships in Tropical Agronomy
semantic web and ontologies, interoperability, FAIR data portal development


Competencies of  LARMANDE, Pierre , HDR scientist
UMR DIADE   plant DIversity Adaptation and DEvelopment

Agronomyartificial intelligenceartificial neural networkbig data /  biochemistry /  bioinformaticsdata (genetics)data (multisource)data analysisdata discoverydata dissemination /  data heterogeneity /  data integrationdata interoperabilitydata miningDATA SCIENCEdata sharingdata warehousedatabase engineeringdatabase management system (DBMS)entity linking (fr: annotation sémantique)FAIR (Find, Access, Interoperate, Reuse) data /  Genome-Wide Association Study (GWAS) /  genomicsgenomics (functional)information systeminteroperabilityknowledge discoveryknowledge representationmachine - deep learningmodelling (molecular)Molecular BiologyNGS (Next Generation Sequencing)ontologyphenotypePython (programming language)riceSDG 02 (Sust. Devel. Goal - Alimentation)SDG 04 (Sust. Devel. Goal - Education)SDG 15 (Sust. Devel. Goal - Terrestrial ecosystems)semantic web /  tropical plant /  UMR Diade (plant DIversity Adapt. & DEv.)Vietnamweb of dataWeb portal devel. /

Competencies in black are unique of P. Larmande 's profile in the current state of the database

•	D2KAB project: a framework to turn agronomy and biodiversity data into semantically described, interoperable, actionable, open knowledge
•	AgroLD (Agronomic Linked Data project): an RDF Knowledge-based Database for plant molecular networks
•	PyRice: a Python package  API developed to access numerous rice supported databases and produce consistent outputs. 
•	GIGWA (Genotype Investigator for Genome Wide Analyses): a web application to manage genomic and genotyping data from NGS analysis
•	OryzaGP (see GitHub repository) : A dataset for Named Entity Recognition for rice genes.
Personal home page   Research gate access   Known production set   ORCID access   email contact   Institution   HDR report (fr)   Google scholar citations   linkedIn access   DBLP access   GitHub   web-link ICT-Lab   PubMed access   web-link D2KAB   web-link AgroLD   software PyRice   software GIGWA  

 

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Last update : 2021-06-17

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